Package: volcano3D 2.0.11

volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data

Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.

Authors:Katriona Goldmann [aut, cre], Myles Lewis [aut]

volcano3D_2.0.11.tar.gz
volcano3D_2.0.11.zip(r-4.7-any)volcano3D_2.0.11.zip(r-4.6-any)volcano3D_2.0.11.zip(r-4.5-any)
volcano3D_2.0.11.tgz(r-4.6-any)volcano3D_2.0.11.tgz(r-4.5-any)
volcano3D_2.0.11.tar.gz(r-4.7-any)volcano3D_2.0.11.tar.gz(r-4.6-any)
volcano3D_2.0.11.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
volcano3D/json (API)

# Install 'volcano3D' in R:
install.packages('volcano3D', repos = c('https://katrionagoldmann.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/katrionagoldmann/volcano3d/issues

Datasets:

On CRAN:

Conda:

bioinformaticsdifferential-expressiondifferential-expression-analysisgene-expressioninteractiveomicsplotlyrna-seqtranscriptomicsvolcanoplots

6.30 score 38 stars 44 scripts 365 downloads 19 exports 115 dependencies

Last updated from:51e9d42329. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK222
source / vignettesOK279
linux-release-x86_64OK214
macos-release-arm64OK174
macos-oldrel-arm64OK233
windows-develOK154
windows-releaseOK131
windows-oldrelOK137
wasm-releaseOK163

Exports:add_animationboxplot_triocalc_pvalscalc_stats_2x3deseq_2x3deseq_2x3_polardeseq_polarforest_ggplotforest_plotforest_plotlypolar_coordspolar_coords_2x3polar_gridradial_ggplotradial_plotlyshow_gridsignificance_subsetvolcano3Dvoom_polar

Dependencies:abindaskpassbackportsbase64encbootbroombslibcachemcarcarDataclicolorspacecorrplotcowplotcpp11crosstalkcurldata.tableDerivdigestdoBydplyrevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmatrixTestsmemoisemgcvmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpbkrtestpillarpkgconfigplotlypolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRdpackreformulasRfastrlangrmarkdownrstatixS7sassscalesSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisLitewithrxfunyamlziggzoo

volcano3D
Getting Started | Prerequisites | Install from CRAN | Install from Github | Load the package | Examples | Creating Polar Coordinates | Gene expression pipeline | Method using DESeq2 | Method using limma voom | Radial Plots | Boxplots | 3D Volcano Plot | Spinning Animation | Saving Plotly Plots | Static Images | Interactive HTML | Citation
Rendered fromVignette.rmdusingknitr::rmarkdown

Last update: 2026-01-14
Started: 2020-02-17

volcano3D: 2x3-way analysis
2x3-way analysis | Example | DESeq2 pipeline | Real world example | Custom 2x3-way analysis | Forest plots | Citation
Rendered fromVignette_2x3.Rmdusingknitr::rmarkdown

Last update: 2026-01-05
Started: 2022-09-09