Package: volcano3D 2.0.11

volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data

Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.

Authors:Katriona Goldmann [aut, cre], Myles Lewis [aut]

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volcano3D.pdf |volcano3D.html✨
volcano3D/json (API)
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Bug tracker:https://github.com/katrionagoldmann/volcano3d/issues

On CRAN:

bioinformaticsdifferential-expressiondifferential-expression-analysisgene-expressioninteractiveomicsplotlyrna-seqtranscriptomicsvolcanoplots

19 exports 32 stars 2.61 score 107 dependencies 35 scripts 291 downloads

Last updated 1 years agofrom:0b3c496f5e. Checks:OK: 1 ERROR: 6. Indexed: yes.

Exports:add_animationboxplot_triocalc_pvalscalc_stats_2x3deseq_2x3deseq_2x3_polardeseq_polarforest_ggplotforest_plotforest_plotlypolar_coordspolar_coords_2x3polar_gridradial_ggplotradial_plotlyshow_gridsignificance_subsetvolcano3Dvoom_polar

Dependencies:abindaskpassbackportsbase64encbootbroombslibcachemcarcarDataclicolorspacecorrplotcowplotcpp11crosstalkcurldata.tableDerivdigestdoBydplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmatrixTestsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplotlypolynompromisespurrrquantregR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppGSLRcppParallelRcppZigguratRfastrlangrmarkdownrstatixsassscalesSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml