Package: volcano3D 2.0.11
volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data
Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.
Authors:
volcano3D_2.0.11.tar.gz
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volcano3D_2.0.11.tgz(r-4.4-any)volcano3D_2.0.11.tgz(r-4.3-any)
volcano3D_2.0.11.tar.gz(r-4.5-noble)volcano3D_2.0.11.tar.gz(r-4.4-noble)
volcano3D_2.0.11.tgz(r-4.4-emscripten)volcano3D_2.0.11.tgz(r-4.3-emscripten)
volcano3D.pdf |volcano3D.html✨
volcano3D/json (API)
NEWS
| # Install 'volcano3D' in R: |
| install.packages('volcano3D', repos = c('https://katrionagoldmann.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/katrionagoldmann/volcano3d/issues
- syn_example_meta - PEAC synovial sample data
- syn_example_rld - PEAC synovial gene expression data
bioinformaticsdifferential-expressiondifferential-expression-analysisgene-expressioninteractiveomicsplotlyrna-seqtranscriptomicsvolcanoplots
Last updated 1 years agofrom:0b3c496f5e. Checks:OK: 1 ERROR: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-win | ERROR | Nov 17 2024 |
| R-4.5-linux | ERROR | Nov 17 2024 |
| R-4.4-win | ERROR | Nov 17 2024 |
| R-4.4-mac | ERROR | Nov 17 2024 |
| R-4.3-win | ERROR | Nov 17 2024 |
| R-4.3-mac | ERROR | Nov 17 2024 |
Exports:add_animationboxplot_triocalc_pvalscalc_stats_2x3deseq_2x3deseq_2x3_polardeseq_polarforest_ggplotforest_plotforest_plotlypolar_coordspolar_coords_2x3polar_gridradial_ggplotradial_plotlyshow_gridsignificance_subsetvolcano3Dvoom_polar
Dependencies:abindaskpassbackportsbase64encbootbroombslibcachemcarcarDataclicolorspacecorrplotcowplotcpp11crosstalkcurldata.tableDerivdigestdoBydplyrevaluatefansifarverfastmapfontawesomeFormulafsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmatrixTestsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplotlypolynompromisespurrrquantregR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppGSLRcppParallelRcppZigguratRfastrlangrmarkdownrstatixsassscalesSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml
